Package: oro.nifti 0.11.5
oro.nifti: Rigorous - 'NIfTI' + 'ANALYZE' + 'AFNI' : Input / Output
Functions for the input/output and visualization of medical imaging data that follow either the 'ANALYZE', 'NIfTI' or 'AFNI' formats. This package is part of the Rigorous Analytics bundle.
Authors:
oro.nifti_0.11.5.tar.gz
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oro.nifti_0.11.5.tgz(r-4.4-any)oro.nifti_0.11.5.tgz(r-4.3-any)
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oro.nifti.pdf |oro.nifti.html✨
oro.nifti/json (API)
NEWS
| # Install 'oro.nifti' in R: |
| install.packages('oro.nifti', repos = c('https://bjw34032.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/bjw34032/oro.nifti/issues
Last updated 2 months agofrom:b5b4e836aa. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 03 2024 |
| R-4.5-win | OK | Nov 03 2024 |
| R-4.5-linux | OK | Nov 03 2024 |
| R-4.4-win | OK | Nov 03 2024 |
| R-4.4-mac | OK | Nov 03 2024 |
| R-4.3-win | OK | Nov 03 2024 |
| R-4.3-mac | OK | Nov 03 2024 |
Exports:.wrapperanlzas.anlzas.niftiaudit.trailaudit.trail<-aux_fileaux_file<-aux.fileaux.file<-bitpixbitpix<-blendblendVolumescal_imgcal_maxcal_max<-cal_mincal_min<-cal_unitscal_units<-cal.maxcal.max<-cal.mincal.min<-cal.unitscal.units<-calibrateImagecompressedcompressed<-convert.bitpixconvert.bitpix.anlzconvert.datatypeconvert.datatype.anlzconvert.formconvert.intentconvert.orient.anlzconvert.sceneconvert.sliceconvert.unitsdata_typedata_type<-data.typedata.type<-datatypedatatype<-db_namedb_name<-db.namedb.name<-descripdescrip<-dim_dim_<-dim_infodim_info<-dim_un0dim_un0<-dim2freqdim2phasedim2slicedrop_img_dimdropImageDimensionenableAuditTrailexp_dateexp_date<-exp_timeexp_time<-extenderextender<-extentsextents<-field_skipfield_skip<-field.skipfield.skip<-funused1funused1<-funused2funused2<-funused3funused3<-generatedgenerated<-getLastCallWithNameglmaxglmax<-glminglmin<-hist_un0hist_un0<-hkey_un0hkey_un0<-hkey.un0hkey.un0<-hotmetalimageimg_dataimg_data<-img_lengthintegerTranslationintent_codeintent_code<-intent_nameintent_name<-intent_p1intent_p1<-intent_p2intent_p2<-intent_p3intent_p3<-intent.codeintent.code<-intent.nameintent.name<-intent.p1intent.p1<-intent.p2intent.p2<-intent.p3intent.p3<-inverseReorientinvertIntegerTranslationis.afniis.anlzis.niftiis.niftiExtensionmagicmagic<-newAuditTrailniftinifti_headerniftiAuditTrailCreatedniftiAuditTrailEventniftiAuditTrailSystemNodeniftiAuditTrailSystemNodeEventniftiExtensionToAuditTrailnii2oronsliNSLIntimNTIMomaxomax<-ominomin<-onefileorientorient<-originorigin<-oro.nifti.infooro2niiorthographicorthographic.niftioverlayoverlay.niftipatient_idpatient_id<-patient.idpatient.id<-performPermutationpixdimpixdim<-qformqform_codeqform_code<-qform.codeqform.code<-qoffset_xqoffset_x<-qoffset_yqoffset_y<-qoffset_zqoffset_z<-qoffset.xqoffset.x<-qoffset.yqoffset.y<-qoffset.zqoffset.z<-quatern_bquatern_b<-quatern_cquatern_c<-quatern_dquatern_d<-quatern.bquatern.b<-quatern.cquatern.c<-quatern.dquatern.d<-quaternion2mat44quaternion2rotationreadAFNIreadANALYZEreadNIfTIregularregular<-reorientresetSlopeInterceptrmgzrmhdrrmhdrgzrmimgrmimggzrmniirmniigzscannumscannum<-scl_interscl_inter<-scl_slopescl_slope<-scl.interscl.inter<-scl.slopescl.slope<-session_errorsession_error<-session.errorsession.error<-sformsform_codesform_code<-sform.codesform.code<-sizeof_hdrsizeof_hdr<-sizeof.hdrsliceslice_codeslice_code<-slice_durationslice_duration<-slice_endslice_end<-slice_overlayslice_overlay.niftislice_startslice_start<-slice.codeslice.code<-slice.durationslice.duration<-slice.endslice.end<-slice.startslice.start<-smaxsmax<-sminsmin<-space.time2xyztsrow_xsrow_x<-srow_ysrow_y<-srow_zsrow_z<-srow.xsrow.x<-srow.ysrow.y<-srow.zsrow.z<-start_fieldstart_field<-tim.colorstoffsettoffset<-translateCoordinateunused1unused1<-verifiedverified<-viewsviews<-vols_addedvols_added<-vols.addedvols.added<-vox_offsetvox_offset<-vox_unitsvox_units<-vox.offsetvox.offset<-vox.unitsvox.units<-voxdimvoxreswriteAFNIwriteANALYZEwriteNIfTIxyzt_unitsxyzt_units<-xyzt.unitsxyzt.units<-xyzt2spacexyzt2timezero_trans
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Class "afni" | afni-class show,afni-method |
| Constructor for Analyze | anlz |
| Class "anlz" | anlz-class show,anlz-method |
| Operations for Objects in the ANALYZE and NIfTI classes | anlz-nifti-ops Ops,anlz,anlz-method Ops,anlz,nifti-method Ops,anlz,numeric-method Ops,nifti,anlz-method Ops,numeric,anlz-method |
| as.anlz | as.anlz |
| as.nifti | as.nifti |
| Facilitate the Creation and Modification of Audit Trails | Audit Trails enableAuditTrail getLastCallWithName newAuditTrail niftiAuditTrailCreated niftiAuditTrailEvent niftiAuditTrailSystemNode niftiAuditTrailSystemNodeEvent niftiAuditTrailToExtension niftiExtensionToAuditTrail oro.nifti.info |
| Extract or Replace NIfTI Audit Trail | audit.trail audit.trail,nifti-method audit.trail-methods audit.trail<- audit.trail<-,nifti-method |
| Extract Image Attribute 'aux_file' | aux.file aux.file,anlz-method aux.file,nifti-method aux.file<- aux.file<-,anlz-method aux.file<-,nifti-method aux_file aux_file,anlz-method aux_file,nifti-method aux_file,niftiImage-method aux_file-methods aux_file-methods, aux_file<- aux_file<-,anlz-method aux_file<-,nifti-method aux_file<-,niftiImage-method |
| Extract Image Attribute 'bitpix' | bitpix bitpix,anlz-method bitpix,nifti-method bitpix,niftiImage-method bitpix-methods bitpix-methods, bitpix<- bitpix<-,anlz-method bitpix<-,nifti-method |
| Merge Two NIfTI or ANALYZE Volumes | blend blend,anlz,anlz-method blend,anlz,anlz-methods blend,anlz,nifti-method blend,anlz,nifti-methods blend,nifti,anlz-method blend,nifti,anlz-methods blend,nifti,nifti-method blend,nifti,nifti-methods blendVolumes |
| Extract Image Attribute 'cal_max' | cal.max cal.max,anlz-method cal.max,nifti-method cal.max,niftiImage-method cal.max<- cal.max<-,anlz-method cal.max<-,nifti-method cal.max<-,niftiImage-method cal_max cal_max,anlz-method cal_max,nifti-method cal_max,niftiImage-method cal_max-methods cal_max-methods, cal_max<- cal_max<-,anlz-method cal_max<-,nifti-method cal_max<-,niftiImage-method |
| Extract Image Attribute 'cal_min' | cal.min cal.min,anlz-method cal.min,nifti-method cal.min,niftiImage-method cal.min<- cal.min<-,anlz-method cal.min<-,nifti-method cal.min<-,niftiImage-method cal_min cal_min,anlz-method cal_min,nifti-method cal_min,niftiImage-method cal_min-methods cal_min-methods, cal_min<- cal_min<-,anlz-method cal_min<-,nifti-method cal_min<-,niftiImage-method |
| Extract Image Attribute 'cal_units' | cal.units cal.units,anlz-method cal.units,nifti-method cal.units<- cal.units<-,anlz-method cal_units cal_units,anlz-method cal_units-methods cal_units-methods, cal_units<- cal_units<-,anlz-method |
| Set Minimum/Maximum Values for NIfTI data | calibrateImage cal_img |
| Force an Object to Belong to the ANALYZE or NIfTI Class | as,array,anlz-method as,array,nifti-method as<-,array,anlz-method as<-,array,nifti-method coerce,anlz,nifti-method coerce,array,anlz-method coerce,array,nifti-method coerce,list,anlz-method coerce,list,nifti-method coerce-methods coerce<-,anlz,nifti-method coerce<-,array,anlz-method coerce<-,array,nifti-method coerce<-,list,anlz-method coerce<-,list,nifti-method |
| Extract Image Attribute 'compressed' | compressed compressed,anlz-method compressed-methods compressed-methods, compressed<- compressed<-,anlz-method |
| Convert ANALYZE Codes | Convert ANALYZE Codes convert.bitpix.anlz convert.datatype.anlz convert.orient.anlz |
| Convert NIfTI Codes | Convert NIfTI Codes convert.bitpix convert.datatype convert.form convert.intent convert.slice convert.units |
| Convert AFNI data codes | convert.scene |
| Extract Image Attribute 'data_type' | data.type data.type,anlz-method data.type,nifti-method data.type<- data.type<-,anlz-method data.type<-,nifti-method datatype,niftiImage-method data_type data_type,anlz-method data_type,nifti-method data_type,niftiImage-method data_type-methods data_type-methods, data_type<- data_type<-,anlz-method data_type<-,nifti-method |
| Extract Image Attribute 'datatype' | datatype datatype,anlz-method datatype,ANY-method datatype,nifti-method datatype-methods datatype-methods, datatype<- datatype<-,anlz-method datatype<-,nifti-method |
| Extract Image Attribute 'db_name' | db.name db.name,anlz-method db.name,nifti-method db.name<- db.name<-,anlz-method db.name<-,nifti-method db_name db_name,anlz-method db_name,nifti-method db_name-methods db_name-methods, db_name<- db_name<-,anlz-method db_name<-,nifti-method |
| Extract Image Attribute 'descrip' | descrip descrip,anlz-method descrip,nifti-method descrip,niftiImage-method descrip-methods descrip-methods, descrip<- descrip<-,anlz-method descrip<-,nifti-method descrip<-,niftiImage-method |
| Extract Image Attribute 'dim_' | dim_ dim_,anlz-method dim_,ANY-method dim_,nifti-method dim_-methods dim_-methods, dim_<- dim_<-,anlz-method dim_<-,nifti-method |
| Extract Image Attribute 'dim_info' | dim_info dim_info,nifti-method dim_info-methods dim_info-methods, dim_info<- dim_info<-,nifti-method |
| Extract Image Attribute 'dim_un0' | dim_un0 dim_un0,anlz-method dim_un0-methods dim_un0-methods, dim_un0<- dim_un0<-,anlz-method |
| Drop Image Dimension | dropImageDimension drop_img_dim |
| Extract Image Attribute 'exp_date' | exp_date exp_date,anlz-method exp_date-methods exp_date-methods, exp_date<- exp_date<-,anlz-method |
| Extract Image Attribute 'exp_time' | exp_time exp_time,anlz-method exp_time-methods exp_time-methods, exp_time<- exp_time<-,anlz-method |
| Extract Image Attribute 'extender' | extender extender,nifti-method extender-methods extender-methods, extender<- extender<-,nifti-method |
| Extract Image Attribute 'extents' | extents extents,anlz-method extents,nifti-method extents-methods extents-methods, extents<- extents<-,anlz-method extents<-,nifti-method |
| Extract Image Attribute 'field_skip' | field.skip field.skip,anlz-method field.skip,nifti-method field.skip<- field.skip<-,anlz-method field_skip field_skip,anlz-method field_skip-methods field_skip-methods, field_skip<- field_skip<-,anlz-method |
| Extract Image Attribute 'funused1' | funused1 funused1,anlz-method funused1-methods funused1-methods, funused1<- funused1<-,anlz-method |
| Extract Image Attribute 'funused2' | funused2 funused2,anlz-method funused2-methods funused2-methods, funused2<- funused2<-,anlz-method |
| Extract Image Attribute 'funused3' | funused3 funused3,anlz-method funused3-methods funused3-methods, funused3<- funused3<-,anlz-method |
| Extract Image Attribute 'generated' | generated generated,anlz-method generated-methods generated-methods, generated<- generated<-,anlz-method |
| Extract Image Attribute 'glmax' | glmax glmax,anlz-method glmax,nifti-method glmax-methods glmax-methods, glmax<- glmax<-,anlz-method glmax<-,nifti-method |
| Extract Image Attribute 'glmin' | glmin glmin,anlz-method glmin,nifti-method glmin-methods glmin-methods, glmin<- glmin<-,anlz-method glmin<-,nifti-method |
| Extract Image Attribute 'hist_un0' | hist_un0 hist_un0,anlz-method hist_un0-methods hist_un0-methods, hist_un0<- hist_un0<-,anlz-method |
| Extract Image Attribute 'hkey_un0' | hkey.un0 hkey.un0,anlz-method hkey.un0,nifti-method hkey.un0<- hkey.un0<-,anlz-method hkey_un0 hkey_un0,anlz-method hkey_un0-methods hkey_un0-methods, hkey_un0<- hkey_un0<-,anlz-method |
| Hot Metal Color Table | hotmetal |
| Methods for Function `image' | image,afni-method image,anlz-method image,ANY-method image,nifti-method image-methods image.nifti |
| Extract Image Attribute '.Data' | img_data img_data,anlz-method img_data,ANY-method img_data,character-method img_data,nifti-method img_data-methods img_data-methods, img_data<- img_data<-,anlz-method img_data<-,nifti-method |
| Gets Image Length in Each Dimension | img_length |
| integerTranslation | integerTranslation invertIntegerTranslation |
| Extract Image Attribute 'intent_code' | intent.code intent.code,nifti-method intent.code<- intent.code<-,nifti-method intent_code intent_code,nifti-method intent_code,niftiImage-method intent_code-methods intent_code-methods, intent_code<- intent_code<-,nifti-method intent_code<-,niftiImage-method |
| Extract Image Attribute 'intent_name' | intent.name intent.name,nifti-method intent.name<- intent.name<-,nifti-method intent_name intent_name,nifti-method intent_name,niftiImage-method intent_name-methods intent_name-methods, intent_name<- intent_name<-,nifti-method intent_name<-,niftiImage-method |
| Extract Image Attribute 'intent_p1' | intent.p1 intent.p1,nifti-method intent.p1<- intent.p1<-,nifti-method intent_p1 intent_p1,nifti-method intent_p1,niftiImage-method intent_p1-methods intent_p1-methods, intent_p1<- intent_p1<-,nifti-method intent_p1<-,niftiImage-method |
| Extract Image Attribute 'intent_p2' | intent.p2 intent.p2,nifti-method intent.p2<- intent.p2<-,nifti-method intent_p2 intent_p2,nifti-method intent_p2,niftiImage-method intent_p2-methods intent_p2-methods, intent_p2<- intent_p2<-,nifti-method intent_p2<-,niftiImage-method |
| Extract Image Attribute 'intent_p3' | intent.p3 intent.p3,nifti-method intent.p3<- intent.p3<-,nifti-method intent_p3 intent_p3,nifti-method intent_p3,niftiImage-method intent_p3-methods intent_p3-methods, intent_p3<- intent_p3<-,nifti-method intent_p3<-,niftiImage-method |
| "internalImage" class | internalImage internalImage-class |
| check object | is.afni |
| check object | is.anlz |
| check object | is.nifti is.niftiExtension |
| Extract Image Attribute 'magic' | magic magic,nifti-method magic,niftiImage-method magic-methods magic-methods, magic<- magic<-,nifti-method magic<-,niftiImage-method |
| Constructor for NIfTI | nifti |
| Methods for Function [<- in Package 'base' | nifti_assign-methods [<-,ANY,ANY,ANY,ANY-method [<-,nifti,ANY,ANY,ANY-method [<-,nifti,ANY,missing,ANY-method [<-,nifti,missing,missing,array-method [<-,nifti,numeric,missing,ANY-method [<-,nifti,numeric,numeric,ANY-method [<--methods |
| Class "nifti" | nifti-class show,nifti-method |
| Operations for NIfTI Objects | nifti-operators Ops,nifti,nifti-method Ops,nifti,numeric-method Ops,numeric,nifti-method |
| Class "niftiAuditTrail" | niftiAuditTrail-class |
| Class "niftiExtension" | niftiExtension-class |
| Class "niftiExtensionSection" | niftiExtensionSection-class |
| "niftiImage" class | niftiImage niftiImage-class |
| Convert RNifti niftiImage to oro.nifti nifti object | nii2oro |
| Dimension Accessor Functions | NSLI nsli NTIM ntim |
| Extract Image Attribute 'omax' | omax omax,anlz-method omax-methods omax-methods, omax<- omax<-,anlz-method |
| Extract Image Attribute 'omin' | omin omin,anlz-method omin-methods omin-methods, omin<- omin<-,anlz-method |
| Creates the 'onefile' Specification for NIfTI | onefile |
| Extract Image Attribute 'orient' | orient orient,anlz-method orient-methods orient-methods, orient<- orient<-,anlz-method |
| Extract NIfTI 3D Image Orientation | orientation-methods qform qform,nifti-method qform-methods sform sform,nifti-method sform-methods |
| Extract Image Attribute 'origin' | origin origin,anlz-method origin,ANY-method origin,nifti-method origin-methods origin-methods, origin<- origin<-,anlz-method origin<-,nifti-method |
| Convert oro.nifti nifti to RNifti niftiImage object | oro2nii |
| Methods for Function `orthographic' in Package `dcemriS4' | orthographic orthographic,afni-method orthographic,anlz-method orthographic,array-method orthographic,nifti-method orthographic-methods orthographic.nifti |
| Methods for Function overlay | overlay overlay,afni,afni-method overlay,afni,array-method overlay,anlz,anlz-method overlay,anlz,array-method overlay,anlz,nifti-method overlay,array,anlz-method overlay,array,array-method overlay,array,nifti-method overlay,nifti,anlz-method overlay,nifti,array-method overlay,nifti,missing-method overlay,nifti,nifti-method overlay-methods overlay.nifti |
| Extract Image Attribute 'patient_id' | patient.id patient.id,anlz-method patient.id,nifti-method patient.id<- patient.id<-,anlz-method patient_id patient_id,anlz-method patient_id-methods patient_id-methods, patient_id<- patient_id<-,anlz-method |
| Transform array with orthogonal permutation matrix | performPermutation |
| Extract Image Attribute 'pixdim' | pixdim pixdim,anlz-method pixdim,ANY-method pixdim,nifti-method pixdim-methods pixdim-methods, pixdim<- pixdim<-,anlz-method pixdim<-,ANY-method pixdim<-,nifti-method |
| Extract Image Attribute 'qform_code' | qform.code qform.code,nifti-method qform.code<- qform.code<-,nifti-method qform_code qform_code,nifti-method qform_code,niftiImage-method qform_code-methods qform_code-methods, qform_code<- qform_code<-,nifti-method qform_code<-,niftiImage-method |
| Extract Image Attribute 'qoffset_x' | qoffset.x qoffset.x,nifti-method qoffset.x<- qoffset.x<-,nifti-method qoffset_x qoffset_x,nifti-method qoffset_x,niftiImage-method qoffset_x-methods qoffset_x-methods, qoffset_x<- qoffset_x<-,nifti-method qoffset_x<-,niftiImage-method |
| Extract Image Attribute 'qoffset_y' | qoffset.y qoffset.y,nifti-method qoffset.y<- qoffset.y<-,nifti-method qoffset_y qoffset_y,nifti-method qoffset_y,niftiImage-method qoffset_y-methods qoffset_y-methods, qoffset_y<- qoffset_y<-,nifti-method qoffset_y<-,niftiImage-method |
| Extract Image Attribute 'qoffset_z' | qoffset.z qoffset.z,nifti-method qoffset.z<- qoffset.z<-,nifti-method qoffset_z qoffset_z,nifti-method qoffset_z,niftiImage-method qoffset_z-methods qoffset_z-methods, qoffset_z<- qoffset_z<-,nifti-method qoffset_z<-,niftiImage-method |
| Extract Image Attribute 'quatern_b' | quatern.b quatern.b,nifti-method quatern.b<- quatern.b<-,nifti-method quatern_b quatern_b,nifti-method quatern_b,niftiImage-method quatern_b-methods quatern_b-methods, quatern_b<- quatern_b<-,nifti-method quatern_b<-,niftiImage-method |
| Extract Image Attribute 'quatern_c' | quatern.c quatern.c,nifti-method quatern.c<- quatern.c<-,nifti-method quatern_c quatern_c,nifti-method quatern_c,niftiImage-method quatern_c-methods quatern_c-methods, quatern_c<- quatern_c<-,nifti-method quatern_c<-,niftiImage-method |
| Extract Image Attribute 'quatern_d' | quatern.d quatern.d,nifti-method quatern.d<- quatern.d<-,nifti-method quatern_d quatern_d,nifti-method quatern_d,niftiImage-method quatern_d-methods quatern_d-methods, quatern_d<- quatern_d<-,nifti-method quatern_d<-,niftiImage-method |
| Convert Quaternion into a Rotation Matrix | quaternion2mat44 quaternion2rotation |
| readAFNI | readAFNI |
| readANALYZE | readANALYZE |
| readNIfTI | nifti_header readNIfTI |
| Extract Image Attribute 'regular' | regular regular,anlz-method regular,nifti-method regular-methods regular-methods, regular<- regular<-,anlz-method regular<-,nifti-method |
| Reorient Image using NIfTI header | inverseReorient reorient |
| Change Intercept to 0 and Slope to 1 in NIfTI Object | resetSlopeIntercept zero_trans |
| Remove File Extensions Around the NIfTI/ANALYZE Formats | rmgz rmhdr rmhdrgz rmimg rmimggz rmnii rmniigz |
| Extract Image Attribute 'scannum' | scannum scannum,anlz-method scannum-methods scannum-methods, scannum<- scannum<-,anlz-method |
| Extract Image Attribute 'scl_inter' | scl.inter scl.inter,nifti-method scl.inter,niftiImage-method scl.inter<- scl.inter<-,nifti-method scl_inter scl_inter,nifti-method scl_inter,niftiImage-method scl_inter-methods scl_inter-methods, scl_inter<- scl_inter<-,nifti-method |
| Extract Image Attribute 'scl_slope' | scl.slope scl.slope,nifti-method scl.slope,niftiImage-method scl.slope<- scl.slope<-,nifti-method scl_slope scl_slope,nifti-method scl_slope,niftiImage-method scl_slope-methods scl_slope-methods, scl_slope<- scl_slope<-,nifti-method |
| Extract Image Attribute 'session_error' | session.error session.error,anlz-method session.error,nifti-method session.error<- session.error<-,anlz-method session.error<-,nifti-method session_error session_error,anlz-method session_error,nifti-method session_error-methods session_error-methods, session_error<- session_error<-,anlz-method session_error<-,nifti-method |
| Extract Image Attribute 'sform_code' | sform.code sform.code,nifti-method sform.code<- sform.code<-,nifti-method sform_code sform_code,nifti-method sform_code,niftiImage-method sform_code-methods sform_code-methods, sform_code<- sform_code<-,nifti-method sform_code<-,niftiImage-method |
| Extract Image Attribute 'sizeof_hdr' | sizeof.hdr sizeof.hdr,anlz-method sizeof.hdr,nifti-method sizeof_hdr sizeof_hdr,anlz-method sizeof_hdr,nifti-method sizeof_hdr-methods sizeof_hdr-methods, sizeof_hdr<- sizeof_hdr<-,anlz-method sizeof_hdr<-,nifti-method |
| Extract Image Attribute 'slice_code' | slice.code slice.code,nifti-method slice.code<- slice.code<-,nifti-method slice_code slice_code,nifti-method slice_code,niftiImage-method slice_code-methods slice_code-methods, slice_code<- slice_code<-,nifti-method slice_code<-,niftiImage-method |
| Extract Image Attribute 'slice_duration' | slice.duration slice.duration,nifti-method slice.duration<- slice.duration<-,nifti-method slice_duration slice_duration,nifti-method slice_duration,niftiImage-method slice_duration-methods slice_duration-methods, slice_duration<- slice_duration<-,nifti-method slice_duration<-,niftiImage-method |
| Extract Image Attribute 'slice_end' | slice.end slice.end,nifti-method slice.end,niftiImage-method slice.end<- slice.end<-,nifti-method slice.end<-,niftiImage-method slice_end slice_end,nifti-method slice_end,niftiImage-method slice_end-methods slice_end-methods, slice_end<- slice_end<-,nifti-method slice_end<-,niftiImage-method |
| Methods for Function slice_overlay | slice_overlay slice_overlay,afni,afni-method slice_overlay,afni,array-method slice_overlay,anlz,anlz-method slice_overlay,anlz,array-method slice_overlay,anlz,nifti-method slice_overlay,array,anlz-method slice_overlay,array,array-method slice_overlay,array,nifti-method slice_overlay,nifti,anlz-method slice_overlay,nifti,array-method slice_overlay,nifti,missing-method slice_overlay,nifti,nifti-method slice_overlay-methods slice_overlay.nifti |
| Extract Image Attribute 'slice_start' | slice.start slice.start,nifti-method slice.start,niftiImage-method slice.start<- slice.start<-,nifti-method slice.start<-,niftiImage-method slice_start slice_start,nifti-method slice_start,niftiImage-method slice_start-methods slice_start-methods, slice_start<- slice_start<-,nifti-method slice_start<-,niftiImage-method |
| Methods for Function `slice' | slice slice,afni-method slice,anlz-method slice,ANY-method slice,array-method slice,nifti-method slice-methods slice.nifti |
| Extract Image Attribute 'smax' | smax smax,anlz-method smax-methods smax-methods, smax<- smax<-,anlz-method |
| Extract Image Attribute 'smin' | smin smin,anlz-method smin-methods smin-methods, smin<- smin<-,anlz-method |
| Extract Image Attribute 'srow_x' | srow.x srow.x,nifti-method srow.x<- srow.x<-,nifti-method srow_x srow_x,nifti-method srow_x,niftiImage-method srow_x-methods srow_x-methods, srow_x<- srow_x<-,nifti-method srow_x<-,niftiImage-method |
| Extract Image Attribute 'srow_y' | srow.y srow.y,nifti-method srow.y<- srow.y<-,nifti-method srow_y srow_y,nifti-method srow_y,niftiImage-method srow_y-methods srow_y-methods, srow_y<- srow_y<-,nifti-method srow_y<-,niftiImage-method |
| Extract Image Attribute 'srow_z' | srow.z srow.z,nifti-method srow.z<- srow.z<-,nifti-method srow_z srow_z,nifti-method srow_z,niftiImage-method srow_z-methods srow_z-methods, srow_z<- srow_z<-,nifti-method srow_z<-,niftiImage-method |
| Extract Image Attribute 'start_field' | start_field start_field,anlz-method start_field-methods start_field-methods, start_field<- start_field<-,anlz-method |
| Tim's Useful Color Table | tim.colors |
| Extract Image Attribute 'toffset' | toffset toffset,nifti-method toffset,niftiImage-method toffset-methods toffset-methods, toffset<- toffset<-,nifti-method toffset<-,niftiImage-method |
| Translate Voxel Coordinates | translateCoordinate |
| Extract Image Attribute 'unused1' | unused1 unused1,anlz-method unused1-methods unused1-methods, unused1<- unused1<-,anlz-method |
| Extract Image Attribute 'verified' | verified verified,anlz-method verified-methods verified-methods, verified<- verified<-,anlz-method |
| Extract Image Attribute 'views' | views views,anlz-method views-methods views-methods, views<- views<-,anlz-method |
| Extract Image Attribute 'vols_added' | vols.added vols.added,anlz-method vols.added,nifti-method vols.added<- vols.added<-,anlz-method vols_added vols_added,anlz-method vols_added-methods vols_added-methods, vols_added<- vols_added<-,anlz-method |
| Extract Image Attribute 'vox_offset' | vox.offset vox.offset,anlz-method vox.offset,nifti-method vox.offset,niftiImage-method vox.offset<- vox.offset<-,anlz-method vox.offset<-,nifti-method vox_offset vox_offset,anlz-method vox_offset,nifti-method vox_offset,niftiImage-method vox_offset-methods vox_offset-methods, vox_offset<- vox_offset<-,anlz-method vox_offset<-,nifti-method |
| Extract Image Attribute 'vox_units' | vox.units vox.units,anlz-method vox.units,nifti-method vox.units<- vox.units<-,anlz-method vox_units vox_units,anlz-method vox_units-methods vox_units-methods, vox_units<- vox_units<-,anlz-method |
| Gets Voxel Dimensions | voxdim |
| Gets Voxel Resolution | voxres |
| writeAFNI | writeAFNI writeAFNI,afni-method writeAFNI,ANY-method writeAFNI-methods |
| writeANALYZE | writeANALYZE writeANALYZE,anlz-method writeANALYZE-methods |
| writeNIfTI | writeNIfTI writeNIfTI,anlz-method writeNIfTI,array-method writeNIfTI,nifti-method writeNIfTI,niftiExtension-method writeNIfTI-methods |
| Extract Image Attribute 'xyzt_units' | xyzt.units xyzt.units,nifti-method xyzt.units<- xyzt.units<-,nifti-method xyzt_units xyzt_units,nifti-method xyzt_units,niftiImage-method xyzt_units-methods xyzt_units-methods, xyzt_units<- xyzt_units<-,nifti-method xyzt_units<-,niftiImage-method |
| Bitwise Conversion Subroutines | dim2freq dim2phase dim2slice space.time2xyzt xyzt2space xyzt2time |
